PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG023722.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB_related
Protein Properties Length: 620aa    MW: 70465.7 Da    PI: 9.703
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG023722.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.41.8e-09411458448
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      WTt E  +l+d+++q+G+g+W+ I + m      Rt+ +++++w+++l
      CCG023722.1 411 WTTPEVMKLIDGIAQYGTGRWTDIKKLMFsstAYRTPIDLRDKWRNLL 458
                      ********************************99************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-12400461IPR009057Homeodomain-like
PROSITE profilePS5129412.882403462IPR017930Myb domain
SMARTSM007171.9E-8407460IPR001005SANT/Myb domain
CDDcd116605.01E-16409459No hitNo description
SuperFamilySSF466893.14E-16409483IPR009057Homeodomain-like
PfamPF002493.8E-7411458IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 620 aa     Download sequence    Send to blast
MDGLDREAHF PKKFASMKCQ RVKVDDSFAP ALEDEAIEVQ HLVAEPKTDN VSVDGGLHSN  60
ITQGPDDLDL GVLDGFLDEV DEVDDIHAVN DFSGAYEDFI LDIELAEKVS YLDYTPRGGS  120
RLRNSSSESQ SPGCSGSSNG AVGMSESSTA TIPKFESKNG WHHKTVKCKL RCSSGDKWNS  180
QEPGEDSMCP TSDDIEDLDE LDDDAKPLIS LVSGKNAKKV VQVAKAGTSV RQKRLRKPTK  240
RYIEELSDPK SKHVMEGKSD LSATFKDKRP KIRSHDELHS GGALTRTPKE PFSENITQAT  300
SKGTDEPLHL RSKPVSERRT NPSFISKDRR WSIRSQNEPY QVRAVKFAPK ELSLTGSSAQ  360
ASFESRPRRG RPKKSLPLSF LESEDDESED DCVKKRTCKK SNDRRKHQRM WTTPEVMKLI  420
DGIAQYGTGR WTDIKKLMFS STAYRTPIDL RDKWRNLLRA SGAQKRKSNK KEVKEKLKDV  480
VRSLPSSVFR RVRELASLHP YPRFSPENFG SFVSDYRPLC IKCSKGSRFE VTPFNLMLSR  540
RVDELIHGHC MPALQFQATV AMSKVMDFRQ TWLKRKQGSS LTRCLTRLAW MFHHHFQLQR  600
VRSHQRVLLQ SFNVEDLERR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2312200.0CU231220.1 Populus EST from mild drought-stressed leaves.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011018717.10.0PREDICTED: uncharacterized protein LOC105121688
RefseqXP_011018718.10.0PREDICTED: uncharacterized protein LOC105121688
TrEMBLU5GCT10.0U5GCT1_POPTR; Uncharacterized protein
STRINGPOPTR_0006s12820.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47162639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.18e-22TRF-like 6